Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02981 | Not Available | Positive | 3398612 - 3399280 | 25372.4 |
| hypothetical protein | HMPREF1534_02982 | Not Available | Negative | 3399747 - 3400886 | 44602.9 |
| hypothetical protein | HMPREF1534_02983 | Not Available | Negative | 3400919 - 3401929 | 38773.4 |
| hypothetical protein | HMPREF1534_02984 | Not Available | Positive | 3401974 - 3402159 | 7098.15 |
| hypothetical protein | HMPREF1534_02985 | Not Available | Positive | 3402456 - 3402872 | 14939.2 |
| hypothetical protein | HMPREF1534_02986 | Not Available | Positive | 3402878 - 3403204 | 12281.4 |
| trag family conjugation system atpase | HMPREF1534_02987 | Not Available | Positive | 3403201 - 3405735 | 97674.3 |
| hypothetical protein | HMPREF1534_02988 | Not Available | Positive | 3405732 - 3406088 | 13252.0 |
| hypothetical protein | HMPREF1534_02989 | Not Available | Positive | 3406085 - 3406714 | 23832.5 |
| conjugative transposon traj protein | HMPREF1534_02990 | Not Available | Positive | 3406717 - 3407730 | 37369.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


