Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| competence protein comea helix-hairpin-helix repeat region | HMPREF1534_02871 | Not Available | Positive | 3282902 - 3283810 | 35341.8 |
| hypothetical protein | HMPREF1534_02872 | Not Available | Negative | 3283807 - 3285222 | 51567.1 |
| hypothetical protein | HMPREF1534_02873 | Not Available | Positive | 3285362 - 3285862 | 19629.1 |
| hypothetical protein | HMPREF1534_02874 | Not Available | Positive | 3286027 - 3286614 | 22982.6 |
| hypothetical protein | HMPREF1534_02875 | Not Available | Negative | 3287299 - 3287421 | 4817.28 |
| hypothetical protein | HMPREF1534_02876 | Not Available | Positive | 3287695 - 3287982 | 11330.8 |
| hypothetical protein | HMPREF1534_02877 | Not Available | Positive | 3288164 - 3288322 | 5624.46 |
| radical sam additional 4fe4s-binding spasm domain-containing protein | HMPREF1534_02878 | Not Available | Positive | 3288475 - 3289863 | 53555.4 |
| hypothetical protein | HMPREF1534_02879 | Not Available | Positive | 3290439 - 3292004 | 60435.6 |
| hypothetical protein | HMPREF1534_02880 | Not Available | Positive | 3292016 - 3292804 | 29651.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


