Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02861 | Not Available | Positive | 3271372 - 3272529 | 46529.9 |
| hypothetical protein | HMPREF1534_02862 | Not Available | Negative | 3272620 - 3273684 | 39030.6 |
| hypothetical protein | HMPREF1534_02863 | Not Available | Positive | 3273892 - 3275697 | 68381.3 |
| peptide chain release factor 2 | HMPREF1534_02864 | Not Available | Positive | 3275830 - 3276948 | 42734.4 |
| hypothetical protein | HMPREF1534_02865 | Not Available | Positive | 3277037 - 3277168 | 4748.02 |
| hypothetical protein | HMPREF1534_02866 | Not Available | Positive | 3277243 - 3277722 | 18466.8 |
| hypothetical protein | HMPREF1534_02867 | Not Available | Positive | 3277798 - 3280293 | 92890.6 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_02868 | Not Available | Positive | 3280464 - 3280967 | 19816.5 |
| hypothetical protein | HMPREF1534_02869 | Not Available | Negative | 3281048 - 3281434 | 15061.8 |
| hypothetical protein | HMPREF1534_02870 | Not Available | Positive | 3281530 - 3282894 | 49193.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


