Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal rna small subunit methyltransferase h | HMPREF1534_02851 | Not Available | Negative | 3261180 - 3262094 | 34694.7 |
| protein mraz | HMPREF1534_02852 | Not Available | Negative | 3262091 - 3262555 | 18079.7 |
| hypothetical protein | HMPREF1534_02853 | Not Available | Positive | 3262923 - 3263741 | 30954.8 |
| hypothetical protein | HMPREF1534_02854 | Not Available | Positive | 3263766 - 3264746 | 37506.2 |
| hypothetical protein | HMPREF1534_02855 | Not Available | Negative | 3265083 - 3266507 | 54211.0 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | HMPREF1534_02856 | Not Available | Positive | 3266533 - 3266967 | 15828.1 |
| hypothetical protein | HMPREF1534_02857 | Not Available | Positive | 3266977 - 3268791 | 70342.7 |
| hypothetical protein | HMPREF1534_02858 | Not Available | Positive | 3268788 - 3269627 | 31375.1 |
| hypothetical protein | HMPREF1534_02859 | Not Available | Positive | 3269624 - 3270967 | 50840.3 |
| hypothetical protein | HMPREF1534_02860 | Not Available | Negative | 3270873 - 3271193 | 12443.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


