Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsa | HMPREF1534_02841 | Not Available | Negative | 3248330 - 3249850 | 55872.9 |
| hypothetical protein | HMPREF1534_02842 | Not Available | Negative | 3249854 - 3250591 | 27987.5 |
| udp-n-acetylmuramate-l-alanine ligase | HMPREF1534_02843 | Not Available | Negative | 3250588 - 3251994 | 52581.8 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | HMPREF1534_02844 | Not Available | Negative | 3251954 - 3253084 | 40863.9 |
| hypothetical protein | HMPREF1534_02845 | Not Available | Negative | 3253138 - 3254520 | 50630.2 |
| udp-n-acetylmuramoylalanine-d-glutamate ligase | HMPREF1534_02846 | Not Available | Negative | 3254569 - 3255903 | 49752.6 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | HMPREF1534_02847 | Not Available | Negative | 3255917 - 3257185 | 46952.6 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate-2, 6-diaminopimelate ligase | HMPREF1534_02848 | Not Available | Negative | 3257197 - 3258651 | 52966.7 |
| hypothetical protein | HMPREF1534_02849 | Not Available | Negative | 3258666 - 3260792 | 78378.4 |
| hypothetical protein | HMPREF1534_02850 | Not Available | Negative | 3260797 - 3261174 | 14748.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


