Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02731 | Not Available | Positive | 3103868 - 3107017 | 116532.0 |
| hypothetical protein | HMPREF1534_02732 | Not Available | Positive | 3107035 - 3108954 | 71698.3 |
| hypothetical protein | HMPREF1534_02733 | Not Available | Positive | 3108969 - 3109832 | 31720.9 |
| hypothetical protein | HMPREF1534_02734 | Not Available | Positive | 3109974 - 3111134 | 44089.6 |
| thioredoxin | HMPREF1534_02735 | Not Available | Positive | 3111532 - 3112008 | 17734.6 |
| hypothetical protein | HMPREF1534_02736 | Not Available | Positive | 3112091 - 3113293 | 44753.9 |
| hypothetical protein | HMPREF1534_02737 | Not Available | Negative | 3113288 - 3113974 | 26160.9 |
| hypothetical protein | HMPREF1534_02738 | Not Available | Negative | 3113974 - 3115401 | 54640.5 |
| hypothetical protein | HMPREF1534_02739 | Not Available | Positive | 3115499 - 3115660 | 5736.06 |
| hypothetical protein | HMPREF1534_02740 | Not Available | Positive | 3115614 - 3117611 | 76626.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


