Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02711 | Not Available | Positive | 3088845 - 3089432 | 22197.4 |
| hypothetical protein | HMPREF1534_02712 | Not Available | Positive | 3089502 - 3089933 | 17042.4 |
| hypothetical protein | HMPREF1534_02713 | Not Available | Positive | 3089930 - 3091660 | 67593.6 |
| hypothetical protein | HMPREF1534_02714 | Not Available | Positive | 3092144 - 3093160 | 38776.1 |
| hypothetical protein | HMPREF1534_02715 | Not Available | Positive | 3093231 - 3093503 | 10643.8 |
| hypothetical protein | HMPREF1534_02716 | Not Available | Positive | 3093570 - 3093695 | 4642.11 |
| hypothetical protein | HMPREF1534_02717 | Not Available | Positive | 3093802 - 3094395 | 23176.2 |
| hypothetical protein | HMPREF1534_02718 | Not Available | Negative | 3094737 - 3094829 | 3674.48 |
| hypothetical protein | HMPREF1534_02719 | Not Available | Positive | 3094858 - 3095358 | 19006.3 |
| hypothetical protein | HMPREF1534_02720 | Not Available | Positive | 3095445 - 3095711 | 10149.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


