Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction atp-dependent dna helicase ruvb | HMPREF1534_02691 | Not Available | Positive | 3066705 - 3067733 | 38035.6 |
| hypothetical protein | HMPREF1534_02692 | Not Available | Positive | 3067736 - 3069178 | 54646.1 |
| tigr00341 family protein | HMPREF1534_02693 | Not Available | Positive | 3069181 - 3070557 | 51013.9 |
| hypothetical protein | HMPREF1534_02694 | Not Available | Positive | 3070603 - 3072714 | 79964.4 |
| hypothetical protein | HMPREF1534_02695 | Not Available | Negative | 3072821 - 3074752 | 72958.5 |
| hypothetical protein | HMPREF1534_02696 | Not Available | Negative | 3074984 - 3075196 | 7823.65 |
| hypothetical protein | HMPREF1534_02697 | Not Available | Negative | 3075211 - 3075447 | 9518.85 |
| hypothetical protein | HMPREF1534_02698 | Not Available | Negative | 3075460 - 3075951 | 18670.6 |
| hypothetical protein | HMPREF1534_02699 | Not Available | Negative | 3075965 - 3076600 | 23604.4 |
| hypothetical protein | HMPREF1534_02700 | Not Available | Negative | 3076625 - 3077455 | 31399.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


