Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02671 | Not Available | Negative | 3043342 - 3043965 | 24914.3 |
| hypothetical protein | HMPREF1534_02672 | Not Available | Positive | 3044039 - 3045379 | 52125.4 |
| hypothetical protein | HMPREF1534_02673 | Not Available | Positive | 3045755 - 3047002 | 47738.1 |
| hypothetical protein | HMPREF1534_02674 | Not Available | Positive | 3047007 - 3047528 | 20271.2 |
| hypothetical protein | HMPREF1534_02675 | Not Available | Positive | 3047495 - 3048298 | 30740.0 |
| hypothetical protein | HMPREF1534_02676 | Not Available | Positive | 3049005 - 3049565 | 22126.5 |
| hypothetical protein | HMPREF1534_02677 | Not Available | Positive | 3049605 - 3049997 | 15017.3 |
| hypothetical protein | HMPREF1534_02678 | Not Available | Positive | 3050218 - 3050412 | 7556.37 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02679 | Not Available | Positive | 3051036 - 3054158 | 115650.0 |
| hypothetical protein | HMPREF1534_02680 | Not Available | Positive | 3054167 - 3056110 | 72714.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


