Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| primosomal protein n' | HMPREF1534_02661 | Not Available | Negative | 3034379 - 3036841 | 93591.6 |
| hypothetical protein | HMPREF1534_02662 | Not Available | Negative | 3036914 - 3037495 | 21031.7 |
| hypothetical protein | HMPREF1534_02663 | Not Available | Negative | 3038136 - 3038423 | 10752.7 |
| hypothetical protein | HMPREF1534_02664 | Not Available | Positive | 3038669 - 3038881 | 8040.0 |
| hypothetical protein | HMPREF1534_02665 | Not Available | Positive | 3038883 - 3039416 | 20969.8 |
| hypothetical protein | HMPREF1534_02666 | Not Available | Negative | 3039456 - 3040337 | 33626.1 |
| hypothetical protein | HMPREF1534_02667 | Not Available | Negative | 3040338 - 3041195 | 32861.2 |
| dna adenine methylase | HMPREF1534_02668 | Not Available | Negative | 3041197 - 3041991 | 30365.0 |
| hypothetical protein | HMPREF1534_02669 | Not Available | Negative | 3042477 - 3042698 | 8716.91 |
| atp:cob(i)alamin adenosyltransferase | HMPREF1534_02670 | Not Available | Negative | 3042770 - 3043333 | 21055.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


