Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s7 | HMPREF1534_02621 | Not Available | Negative | 2989479 - 2989955 | 18202.2 |
| 30s ribosomal protein s12 | HMPREF1534_02622 | Not Available | Negative | 2990117 - 2990530 | 14994.4 |
| hypothetical protein | HMPREF1534_02623 | Not Available | Negative | 2990722 - 2991063 | 12536.1 |
| hypothetical protein | HMPREF1534_02624 | Not Available | Negative | 2991163 - 2991987 | 30486.1 |
| hypothetical protein | HMPREF1534_02625 | Not Available | Positive | 2992703 - 2992822 | 4402.57 |
| dna-directed rna polymerase subunit beta' | HMPREF1534_02626 | Not Available | Negative | 2993662 - 2997951 | 159030.0 |
| dna-directed rna polymerase subunit beta | HMPREF1534_02627 | Not Available | Negative | 2997988 - 3001800 | 142436.0 |
| 50s ribosomal protein l7/l12 | HMPREF1534_02628 | Not Available | Negative | 3001905 - 3002282 | 12693.2 |
| hypothetical protein | HMPREF1534_02629 | Not Available | Negative | 3002329 - 3002847 | 18573.6 |
| 50s ribosomal protein l1 | HMPREF1534_02630 | Not Available | Negative | 3002863 - 3003561 | 24934.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


