Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l16 | HMPREF1534_02611 | Not Available | Negative | 2982595 - 2983029 | 16206.8 |
| 30s ribosomal protein s3 | HMPREF1534_02612 | Not Available | Negative | 2983051 - 2983782 | 27102.1 |
| 50s ribosomal protein l22 | HMPREF1534_02613 | Not Available | Negative | 2983789 - 2984199 | 15570.1 |
| 30s ribosomal protein s19 | HMPREF1534_02614 | Not Available | Negative | 2984236 - 2984505 | 9856.1 |
| 50s ribosomal protein l2 | HMPREF1534_02615 | Not Available | Negative | 2984528 - 2985349 | 29539.8 |
| hypothetical protein | HMPREF1534_02616 | Not Available | Negative | 2985355 - 2985645 | 10832.2 |
| 50s ribosomal protein l4 | HMPREF1534_02617 | Not Available | Negative | 2985667 - 2986293 | 22918.7 |
| 50s ribosomal protein l3 | HMPREF1534_02618 | Not Available | Negative | 2986293 - 2986910 | 21900.8 |
| 30s ribosomal protein s10 | HMPREF1534_02619 | Not Available | Negative | 2986931 - 2987236 | 11391.0 |
| elongation factor g | HMPREF1534_02620 | Not Available | Negative | 2987329 - 2989446 | 77447.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


