Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit alpha | HMPREF1534_02591 | Not Available | Negative | 2972907 - 2973899 | 37547.1 |
| 30s ribosomal protein s4 | HMPREF1534_02592 | Not Available | Negative | 2973911 - 2974516 | 22561.2 |
| 30s ribosomal protein s11 | HMPREF1534_02593 | Not Available | Negative | 2974636 - 2975025 | 13892.9 |
| 30s ribosomal protein s13 | HMPREF1534_02594 | Not Available | Negative | 2975037 - 2975417 | 14135.3 |
| 50s ribosomal protein l36 | HMPREF1534_02595 | Not Available | Negative | 2975451 - 2975567 | 4586.82 |
| translation initiation factor if-1 | HMPREF1534_02596 | Not Available | Negative | 2975582 - 2975800 | 8235.14 |
| methionine aminopeptidase, type i | HMPREF1534_02597 | Not Available | Negative | 2975802 - 2976599 | 29207.1 |
| preprotein translocase, secy subunit | HMPREF1534_02598 | Not Available | Negative | 2976612 - 2977958 | 49282.6 |
| 50s ribosomal protein l15 | HMPREF1534_02599 | Not Available | Negative | 2977963 - 2978409 | 15657.0 |
| 50s ribosomal protein l30 | HMPREF1534_02600 | Not Available | Negative | 2978441 - 2978617 | 6418.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


