Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02551 | Not Available | Positive | 2926910 - 2927383 | 18642.8 |
| hypothetical protein | HMPREF1534_02552 | Not Available | Positive | 2927459 - 2930146 | 98085.7 |
| hypothetical protein | HMPREF1534_02553 | Not Available | Negative | 2930319 - 2930567 | 9859.02 |
| hypothetical protein | HMPREF1534_02554 | Not Available | Negative | 2930638 - 2930931 | 11575.1 |
| hypothetical protein | HMPREF1534_02555 | Not Available | Positive | 2931148 - 2931384 | 9052.91 |
| hypothetical protein | HMPREF1534_02556 | Not Available | Positive | 2931584 - 2932249 | 25346.1 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02557 | Not Available | Positive | 2932718 - 2935891 | 117667.0 |
| hypothetical protein | HMPREF1534_02558 | Not Available | Positive | 2935910 - 2937583 | 64129.6 |
| hypothetical protein | HMPREF1534_02559 | Not Available | Positive | 2937762 - 2938547 | 29367.7 |
| hypothetical protein | HMPREF1534_02560 | Not Available | Positive | 2938597 - 2939622 | 38275.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


