Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02531 | Not Available | Negative | 2903487 - 2904935 | 54780.0 |
| hypothetical protein | HMPREF1534_02532 | Not Available | Negative | 2904944 - 2906515 | 60329.2 |
| hypothetical protein | HMPREF1534_02533 | Not Available | Positive | 2906729 - 2906866 | 5223.43 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02534 | Not Available | Positive | 2907285 - 2910314 | 110663.0 |
| hypothetical protein | HMPREF1534_02535 | Not Available | Positive | 2910341 - 2912107 | 67679.4 |
| hypothetical protein | HMPREF1534_02536 | Not Available | Positive | 2912180 - 2913979 | 68559.3 |
| hypothetical protein | HMPREF1534_02537 | Not Available | Positive | 2914031 - 2914336 | 11859.2 |
| hypothetical protein | HMPREF1534_02538 | Not Available | Negative | 2914223 - 2916673 | 93466.7 |
| hypothetical protein | HMPREF1534_02539 | Not Available | Positive | 2916712 - 2916909 | 7600.57 |
| hypothetical protein | HMPREF1534_02540 | Not Available | Negative | 2916987 - 2917178 | 7621.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


