Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | HMPREF1534_02501 | Not Available | Negative | 2866298 - 2867506 | 45100.6 |
| hypothetical protein | HMPREF1534_02502 | Not Available | Negative | 2867538 - 2868095 | 20690.0 |
| arginine repressor | HMPREF1534_02503 | Not Available | Negative | 2868115 - 2868591 | 17460.2 |
| hypothetical protein | HMPREF1534_02504 | Not Available | Negative | 2868800 - 2870812 | 77014.6 |
| hypothetical protein | HMPREF1534_02505 | Not Available | Negative | 2870828 - 2872696 | 71847.1 |
| rhamnulokinase | HMPREF1534_02506 | Not Available | Positive | 2872908 - 2874389 | 54864.8 |
| rhamnulose-1-phosphate aldolase | HMPREF1534_02507 | Not Available | Positive | 2874437 - 2875246 | 30162.5 |
| hypothetical protein | HMPREF1534_02508 | Not Available | Negative | 2875353 - 2876024 | 25909.4 |
| hypothetical protein | HMPREF1534_02509 | Not Available | Positive | 2876398 - 2877435 | 38893.0 |
| hypothetical protein | HMPREF1534_02510 | Not Available | Negative | 2877445 - 2878299 | 32638.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


