Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02491 | Not Available | Negative | 2854306 - 2855958 | 62258.2 |
| hypothetical protein | HMPREF1534_02492 | Not Available | Negative | 2855970 - 2856524 | 20581.9 |
| hypothetical protein | HMPREF1534_02493 | Not Available | Negative | 2856687 - 2856917 | 8771.98 |
| hypothetical protein | HMPREF1534_02494 | Not Available | Positive | 2856932 - 2859130 | 84419.4 |
| pyrroline-5-carboxylate reductase | HMPREF1534_02495 | Not Available | Negative | 2859434 - 2860210 | 27326.3 |
| hypothetical protein | HMPREF1534_02496 | Not Available | Negative | 2860550 - 2861305 | 28053.8 |
| hypothetical protein | HMPREF1534_02497 | Not Available | Positive | 2861761 - 2862663 | 33811.8 |
| hypothetical protein | HMPREF1534_02498 | Not Available | Positive | 2862765 - 2863877 | 41721.2 |
| hypothetical protein | HMPREF1534_02499 | Not Available | Negative | 2864190 - 2865314 | 40821.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | HMPREF1534_02500 | Not Available | Negative | 2865327 - 2866295 | 36057.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


