Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate 5-kinase | HMPREF1534_02481 | Not Available | Negative | 2835563 - 2836645 | 39525.8 |
| hypothetical protein | HMPREF1534_02482 | Not Available | Negative | 2836857 - 2837024 | 6460.0 |
| glpgli family protein | HMPREF1534_02483 | Not Available | Positive | 2837172 - 2838884 | 63143.9 |
| hypothetical protein | HMPREF1534_02484 | Not Available | Positive | 2838912 - 2841104 | 82275.2 |
| hypothetical protein | HMPREF1534_02485 | Not Available | Negative | 2841227 - 2843239 | 76006.0 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02486 | Not Available | Negative | 2843255 - 2846479 | 119047.0 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02487 | Not Available | Positive | 2847058 - 2850264 | 118302.0 |
| hypothetical protein | HMPREF1534_02488 | Not Available | Positive | 2850279 - 2852039 | 65740.4 |
| hypothetical protein | HMPREF1534_02489 | Not Available | Positive | 2852235 - 2853626 | 53583.4 |
| hypothetical protein | HMPREF1534_02490 | Not Available | Negative | 2853790 - 2854257 | 16909.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


