Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dj-1 family protein | HMPREF1534_02431 | Not Available | Negative | 2771572 - 2772123 | 19258.5 |
| tonb family domain-containing protein | HMPREF1534_02432 | Not Available | Negative | 2772127 - 2773017 | 31288.4 |
| hypothetical protein | HMPREF1534_02433 | Not Available | Negative | 2773081 - 2773500 | 15989.8 |
| hypothetical protein | HMPREF1534_02434 | Not Available | Negative | 2773507 - 2774223 | 25710.9 |
| pyridoxine 5'-phosphate synthase | HMPREF1534_02435 | Not Available | Negative | 2774223 - 2774936 | 26321.5 |
| hypothetical protein | HMPREF1534_02436 | Not Available | Positive | 2775046 - 2775927 | 32786.2 |
| hypothetical protein | HMPREF1534_02437 | Not Available | Positive | 2776731 - 2777384 | 24961.8 |
| exonuclease sbcc | HMPREF1534_02438 | Not Available | Negative | 2777538 - 2780627 | 116580.0 |
| exonuclease sbccd, d subunit | HMPREF1534_02439 | Not Available | Negative | 2780646 - 2781884 | 46555.5 |
| hypothetical protein | HMPREF1534_02440 | Not Available | Negative | 2781902 - 2784250 | 88665.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


