Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna primase | HMPREF1534_02421 | Not Available | Positive | 2760985 - 2763036 | 78464.2 |
| gtp cyclohydrolase 1 | HMPREF1534_02422 | Not Available | Negative | 2763254 - 2763847 | 22708.7 |
| hypothetical protein | HMPREF1534_02423 | Not Available | Negative | 2763849 - 2764307 | 17108.6 |
| triosephosphate isomerase | HMPREF1534_02424 | Not Available | Negative | 2764484 - 2765239 | 26861.1 |
| hypothetical protein | HMPREF1534_02425 | Not Available | Negative | 2765269 - 2766576 | 50748.5 |
| hypothetical protein | HMPREF1534_02426 | Not Available | Negative | 2766566 - 2767108 | 20754.1 |
| hypothetical protein | HMPREF1534_02427 | Not Available | Negative | 2767222 - 2768112 | 33303.2 |
| nucleoside diphosphate kinase | HMPREF1534_02428 | Not Available | Negative | 2768133 - 2768597 | 17381.0 |
| atp-dependent dna helicase recg | HMPREF1534_02429 | Not Available | Negative | 2768818 - 2770914 | 79798.0 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | HMPREF1534_02430 | Not Available | Negative | 2770916 - 2771575 | 24329.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


