Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l32 | HMPREF1534_02409 | Not Available | Negative | 2752888 - 2753073 | 6838.3 |
| hypothetical protein | HMPREF1534_02410 | Not Available | Negative | 2753085 - 2753618 | 20048.8 |
| Trna-ala | Not Available | Not Available | Positive | 2754180 - 2754253 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 2754267 - 2754343 | Not Available |
| hypothetical protein | HMPREF1534_02415 | Not Available | Positive | 2756772 - 2756963 | 7011.6 |
| hypothetical protein | HMPREF1534_02416 | Not Available | Positive | 2758009 - 2758338 | 12015.3 |
| hypothetical protein | HMPREF1534_02417 | Not Available | Positive | 2758438 - 2758686 | 9973.09 |
| hypothetical protein | HMPREF1534_02418 | Not Available | Positive | 2758715 - 2759302 | 22262.0 |
| hypothetical protein | HMPREF1534_02419 | Not Available | Positive | 2759313 - 2759606 | 10926.5 |
| hypothetical protein | HMPREF1534_02420 | Not Available | Positive | 2759905 - 2760906 | 36074.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


