Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trigger factor | HMPREF1534_02399 | Not Available | Negative | 2744697 - 2746052 | 51663.9 |
| hypothetical protein | HMPREF1534_02400 | Not Available | Negative | 2746298 - 2746393 | 3604.48 |
| hypothetical protein | HMPREF1534_02401 | Not Available | Positive | 2746436 - 2746684 | 9193.09 |
| hypothetical protein | HMPREF1534_02402 | Not Available | Negative | 2746781 - 2747605 | 31119.6 |
| hypothetical protein | HMPREF1534_02403 | Not Available | Positive | 2747776 - 2748477 | 25812.2 |
| hypothetical protein | HMPREF1534_02404 | Not Available | Positive | 2748474 - 2749250 | 29473.7 |
| hypothetical protein | HMPREF1534_02405 | Not Available | Negative | 2749291 - 2749446 | 6423.87 |
| gtpase der | HMPREF1534_02406 | Not Available | Negative | 2749468 - 2750781 | 49726.9 |
| gtp-binding protein era | HMPREF1534_02407 | Not Available | Negative | 2750815 - 2751696 | 33733.0 |
| 3-oxoacyl-[acyl-carrier-protein] synthase 3 | HMPREF1534_02408 | Not Available | Negative | 2751779 - 2752783 | 36762.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


