Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02389 | Not Available | Negative | 2730241 - 2731602 | 52130.5 |
| hypothetical protein | HMPREF1534_02390 | Not Available | Negative | 2731607 - 2732479 | 33931.4 |
| hypothetical protein | HMPREF1534_02391 | Not Available | Negative | 2732516 - 2733886 | 52785.6 |
| inosine-5'-monophosphate dehydrogenase | HMPREF1534_02392 | Not Available | Negative | 2733899 - 2735374 | 52668.9 |
| hypothetical protein | HMPREF1534_02393 | Not Available | Negative | 2735489 - 2737618 | 78897.0 |
| hypothetical protein | HMPREF1534_02394 | Not Available | Negative | 2738070 - 2739683 | 61366.1 |
| hypothetical protein | HMPREF1534_02395 | Not Available | Negative | 2739701 - 2740057 | 13826.8 |
| atp-dependent dna helicase recq | HMPREF1534_02396 | Not Available | Negative | 2740226 - 2742406 | 81640.6 |
| atp-dependent clp protease atp-binding subunit clpx | HMPREF1534_02397 | Not Available | Negative | 2742563 - 2743810 | 46614.6 |
| atp-dependent clp protease proteolytic subunit | HMPREF1534_02398 | Not Available | Negative | 2743847 - 2744518 | 24856.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


