Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02379 | Not Available | Negative | 2718635 - 2718880 | 8739.39 |
| hypothetical protein | HMPREF1534_02380 | Not Available | Positive | 2719412 - 2720332 | 34880.1 |
| hypothetical protein | HMPREF1534_02381 | Not Available | Positive | 2720345 - 2721598 | 46450.9 |
| hypothetical protein | HMPREF1534_02382 | Not Available | Negative | 2721825 - 2723426 | 60550.5 |
| hypothetical protein | HMPREF1534_02383 | Not Available | Negative | 2723467 - 2723967 | 19196.5 |
| hypothetical protein | HMPREF1534_02384 | Not Available | Positive | 2724055 - 2724822 | 29686.8 |
| hypothetical protein | HMPREF1534_02385 | Not Available | Positive | 2724930 - 2726129 | 43603.9 |
| dna mismatch repair protein mutl | HMPREF1534_02386 | Not Available | Negative | 2726350 - 2728230 | 69310.5 |
| hypothetical protein | HMPREF1534_02387 | Not Available | Negative | 2728252 - 2728548 | 11632.5 |
| hypothetical protein | HMPREF1534_02388 | Not Available | Negative | 2728551 - 2730221 | 64013.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


