Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02359 | Not Available | Negative | 2690216 - 2690614 | 15054.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02360 | Not Available | Negative | 2690628 - 2693846 | 120475.0 |
| hypothetical protein | HMPREF1534_02361 | Not Available | Positive | 2694746 - 2697427 | 101606.0 |
| hypothetical protein | HMPREF1534_02362 | Not Available | Positive | 2697433 - 2699340 | 69560.4 |
| [fefe] hydrogenase, group a | HMPREF1534_02363 | Not Available | Positive | 2699402 - 2701168 | 65099.6 |
| hypothetical protein | HMPREF1534_02364 | Not Available | Positive | 2701189 - 2701665 | 17503.6 |
| hypothetical protein | HMPREF1534_02365 | Not Available | Positive | 2701824 - 2703377 | 55946.2 |
| hypothetical protein | HMPREF1534_02366 | Not Available | Negative | 2703580 - 2704857 | 47485.9 |
| hypothetical protein | HMPREF1534_02367 | Not Available | Negative | 2705096 - 2707555 | 89605.1 |
| hypothetical protein | HMPREF1534_02368 | Not Available | Negative | 2707587 - 2708498 | 33937.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


