Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate efflux family protein | HMPREF1534_02349 | Not Available | Positive | 2678298 - 2679632 | 49469.1 |
| hypothetical protein | HMPREF1534_02350 | Not Available | Positive | 2679656 - 2682136 | 93995.0 |
| hypothetical protein | HMPREF1534_02351 | Not Available | Positive | 2682228 - 2683574 | 49463.2 |
| hypothetical protein | HMPREF1534_02352 | Not Available | Positive | 2683774 - 2684079 | 10893.0 |
| rlua family pseudouridine synthase | HMPREF1534_02353 | Not Available | Negative | 2684139 - 2684810 | 25356.7 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | HMPREF1534_02354 | Not Available | Negative | 2684818 - 2685564 | 26052.5 |
| hypothetical protein | HMPREF1534_02355 | Not Available | Negative | 2685595 - 2686194 | 22587.4 |
| Trna-met | Not Available | Not Available | Positive | 2686426 - 2686501 | Not Available |
| hypothetical protein | HMPREF1534_02357 | Not Available | Negative | 2687478 - 2688887 | 53050.4 |
| hypothetical protein | HMPREF1534_02358 | Not Available | Positive | 2689033 - 2690196 | 45784.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


