Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [fefe] hydrogenase h-cluster maturation gtpase hydf | HMPREF1534_02329 | Not Available | Positive | 2648327 - 2649511 | 43366.7 |
| hypothetical protein | HMPREF1534_02330 | Not Available | Positive | 2649534 - 2652077 | 95162.8 |
| histidyl-trna synthetase | HMPREF1534_02331 | Not Available | Negative | 2652145 - 2653509 | 50429.9 |
| hypothetical protein | HMPREF1534_02332 | Not Available | Positive | 2653811 - 2655031 | 46579.8 |
| hypothetical protein | HMPREF1534_02333 | Not Available | Positive | 2655044 - 2655412 | 13637.7 |
| hypothetical protein | HMPREF1534_02334 | Not Available | Negative | 2655468 - 2656322 | 33129.0 |
| hypothetical protein | HMPREF1534_02335 | Not Available | Positive | 2656541 - 2657782 | 48130.8 |
| hypothetical protein | HMPREF1534_02336 | Not Available | Positive | 2658034 - 2659005 | 37192.6 |
| hypothetical protein | HMPREF1534_02337 | Not Available | Positive | 2659272 - 2660579 | 50771.5 |
| hypothetical protein | HMPREF1534_02338 | Not Available | Positive | 2660891 - 2661388 | 18037.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


