Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02319 | Not Available | Negative | 2638130 - 2639038 | 35442.2 |
| hypothetical protein | HMPREF1534_02320 | Not Available | Negative | 2639048 - 2639635 | 22210.6 |
| mate efflux family protein | HMPREF1534_02321 | Not Available | Negative | 2639672 - 2641024 | 49329.0 |
| Trna-thr | Not Available | Not Available | Positive | 2641453 - 2641526 | Not Available |
| hypothetical protein | HMPREF1534_02323 | Not Available | Negative | 2641622 - 2642035 | 15231.6 |
| chaperonin | HMPREF1534_02324 | Not Available | Negative | 2642145 - 2643782 | 58163.1 |
| chaperonin | HMPREF1534_02325 | Not Available | Negative | 2643823 - 2644095 | 9726.89 |
| [fefe] hydrogenase, group b1/b3 | HMPREF1534_02326 | Not Available | Positive | 2644353 - 2645831 | 54649.9 |
| [fefe] hydrogenase h-cluster radical sam maturase hyde | HMPREF1534_02327 | Not Available | Positive | 2645815 - 2646876 | 40223.4 |
| [fefe] hydrogenase h-cluster radical sam maturase hydg | HMPREF1534_02328 | Not Available | Positive | 2646893 - 2648311 | 53203.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


