Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02249 | Not Available | Negative | 2546945 - 2547175 | 9184.43 |
| hypothetical protein | HMPREF1534_02250 | Not Available | Negative | 2547159 - 2547659 | 18962.9 |
| phosphoglycolate phosphatase, bacterial | HMPREF1534_02251 | Not Available | Positive | 2547722 - 2548372 | 24008.6 |
| hypothetical protein | HMPREF1534_02252 | Not Available | Positive | 2549215 - 2549655 | 16252.5 |
| hypothetical protein | HMPREF1534_02253 | Not Available | Negative | 2549659 - 2550657 | 39168.3 |
| hypothetical protein | HMPREF1534_02254 | Not Available | Negative | 2550679 - 2551500 | 31266.6 |
| hypothetical protein | HMPREF1534_02255 | Not Available | Positive | 2551585 - 2552517 | 33539.0 |
| hypothetical protein | HMPREF1534_02256 | Not Available | Negative | 2552550 - 2553407 | 32023.1 |
| hypothetical protein | HMPREF1534_02257 | Not Available | Negative | 2553438 - 2554664 | 45575.7 |
| hypothetical protein | HMPREF1534_02258 | Not Available | Negative | 2554693 - 2555457 | 29295.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


