Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02239 | Not Available | Negative | 2533364 - 2535010 | 61627.4 |
| hypothetical protein | HMPREF1534_02240 | Not Available | Positive | 2535828 - 2537117 | 48609.3 |
| hypothetical protein | HMPREF1534_02241 | Not Available | Positive | 2537153 - 2538394 | 47429.5 |
| hypothetical protein | HMPREF1534_02242 | Not Available | Positive | 2538663 - 2540615 | 73415.8 |
| hypothetical protein | HMPREF1534_02243 | Not Available | Negative | 2540708 - 2541412 | 26121.9 |
| hypothetical protein | HMPREF1534_02244 | Not Available | Negative | 2541426 - 2542430 | 38662.8 |
| hypothetical protein | HMPREF1534_02245 | Not Available | Negative | 2542437 - 2543294 | 31301.6 |
| sodium ion-translocating decarboxylase, beta subunit | HMPREF1534_02246 | Not Available | Negative | 2543529 - 2544764 | 44286.1 |
| hypothetical protein | HMPREF1534_02247 | Not Available | Negative | 2544764 - 2546626 | 68929.6 |
| hypothetical protein | HMPREF1534_02248 | Not Available | Negative | 2546654 - 2546905 | 8795.32 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


