Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr01212 family radical sam protein | HMPREF1534_02229 | Not Available | Negative | 2520129 - 2521055 | 35781.8 |
| hypothetical protein | HMPREF1534_02230 | Not Available | Positive | 2521143 - 2523344 | 83344.1 |
| lipoyl synthase | HMPREF1534_02231 | Not Available | Positive | 2523393 - 2524247 | 31749.2 |
| hypothetical protein | HMPREF1534_02232 | Not Available | Positive | 2524304 - 2525296 | 37881.1 |
| hypothetical protein | HMPREF1534_02233 | Not Available | Negative | 2525306 - 2527906 | 96988.3 |
| hypothetical protein | HMPREF1534_02234 | Not Available | Negative | 2528406 - 2528555 | 5741.03 |
| hypothetical protein | HMPREF1534_02235 | Not Available | Positive | 2528861 - 2529184 | 12174.2 |
| hypothetical protein | HMPREF1534_02236 | Not Available | Positive | 2529310 - 2530392 | 42166.6 |
| hypothetical protein | HMPREF1534_02237 | Not Available | Positive | 2530406 - 2532169 | 67971.0 |
| hypothetical protein | HMPREF1534_02238 | Not Available | Positive | 2532340 - 2532756 | 16261.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


