Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02188 | Not Available | Positive | 2464813 - 2467101 | 87553.4 |
| dna repair protein rada | HMPREF1534_02189 | Not Available | Positive | 2467127 - 2468491 | 49852.6 |
| hypothetical protein | HMPREF1534_02190 | Not Available | Positive | 2468531 - 2469178 | 24043.8 |
| hypothetical protein | HMPREF1534_02191 | Not Available | Positive | 2469186 - 2470805 | 59912.8 |
| hypothetical protein | HMPREF1534_02192 | Not Available | Positive | 2471189 - 2471800 | 22880.8 |
| hypothetical protein | HMPREF1534_02193 | Not Available | Positive | 2471888 - 2474200 | 87093.7 |
| hypothetical protein | HMPREF1534_02194 | Not Available | Negative | 2474273 - 2475277 | 38419.2 |
| hypothetical protein | HMPREF1534_02195 | Not Available | Negative | 2475274 - 2477139 | 70680.6 |
| homoserine o-succinyltransferase | HMPREF1534_02196 | Not Available | Negative | 2477136 - 2478053 | 35749.9 |
| hypothetical protein | HMPREF1534_02197 | Not Available | Positive | 2478195 - 2479781 | 60975.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


