Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02148 | Not Available | Positive | 2407746 - 2408963 | 45348.9 |
| hypothetical protein | HMPREF1534_02149 | Not Available | Positive | 2409357 - 2411105 | 66416.9 |
| hypothetical protein | HMPREF1534_02150 | Not Available | Positive | 2411209 - 2412969 | 67302.7 |
| hypothetical protein | HMPREF1534_02151 | Not Available | Positive | 2412977 - 2414476 | 57270.6 |
| hypothetical protein | HMPREF1534_02152 | Not Available | Negative | 2414636 - 2416975 | 89118.6 |
| hypothetical protein | HMPREF1534_02153 | Not Available | Negative | 2417121 - 2420540 | 128595.0 |
| hypothetical protein | HMPREF1534_02154 | Not Available | Negative | 2420568 - 2423564 | 113665.0 |
| solute:sodium symporter (sss) family transporter | HMPREF1534_02155 | Not Available | Negative | 2423592 - 2425151 | 56509.4 |
| hypothetical protein | HMPREF1534_02156 | Not Available | Negative | 2425164 - 2426051 | 33089.4 |
| hypothetical protein | HMPREF1534_02157 | Not Available | Negative | 2426088 - 2426879 | 28098.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


