Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02118 | Not Available | Negative | 2368880 - 2370679 | 66636.6 |
| sua5/ycio/yrdc/ywlc family protein | HMPREF1534_02119 | Not Available | Negative | 2370690 - 2371265 | 20971.2 |
| n-acetylglucosamine-6-phosphate deacetylase | HMPREF1534_02120 | Not Available | Negative | 2371413 - 2372576 | 42107.6 |
| hypothetical protein | HMPREF1534_02121 | Not Available | Positive | 2373026 - 2374468 | 54914.1 |
| hypothetical protein | HMPREF1534_02122 | Not Available | Negative | 2374493 - 2374813 | 11923.1 |
| hypothetical protein | HMPREF1534_02123 | Not Available | Negative | 2374965 - 2376713 | 68004.3 |
| hypothetical protein | HMPREF1534_02124 | Not Available | Negative | 2377036 - 2380212 | 120177.0 |
| hypothetical protein | HMPREF1534_02125 | Not Available | Negative | 2380209 - 2381702 | 56888.7 |
| hypothetical protein | HMPREF1534_02126 | Not Available | Negative | 2381680 - 2384760 | 115691.0 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_02127 | Not Available | Negative | 2384807 - 2385880 | 39076.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


