Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02098 | Not Available | Negative | 2344550 - 2346094 | 57611.0 |
| hypothetical protein | HMPREF1534_02099 | Not Available | Negative | 2346110 - 2346730 | 24105.2 |
| capsular exopolysaccharide family protein | HMPREF1534_02100 | Not Available | Negative | 2346791 - 2349163 | 87966.8 |
| hypothetical protein | HMPREF1534_02101 | Not Available | Negative | 2349184 - 2349948 | 27913.8 |
| hypothetical protein | HMPREF1534_02102 | Not Available | Negative | 2350069 - 2350599 | 20436.2 |
| hypothetical protein | HMPREF1534_02103 | Not Available | Negative | 2350973 - 2351911 | 36135.8 |
| transcriptional regulatory protein rpry | HMPREF1534_02104 | Not Available | Negative | 2352033 - 2352731 | 26742.5 |
| sensor protein rprx | HMPREF1534_02105 | Not Available | Negative | 2352733 - 2354298 | 59926.9 |
| translation elongation factor g | HMPREF1534_02106 | Not Available | Negative | 2354563 - 2356722 | 80666.6 |
| hypothetical protein | HMPREF1534_02107 | Not Available | Positive | 2357002 - 2358135 | 43354.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


