Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02078 | Not Available | Negative | 2329666 - 2329905 | 9364.15 |
| hypothetical protein | HMPREF1534_02079 | Not Available | Positive | 2330116 - 2330589 | 17015.3 |
| hypothetical protein | HMPREF1534_02080 | Not Available | Positive | 2330659 - 2330763 | 3526.56 |
| hypothetical protein | HMPREF1534_02081 | Not Available | Positive | 2330783 - 2331238 | 17280.5 |
| hypothetical protein | HMPREF1534_02082 | Not Available | Negative | 2331284 - 2331499 | 8148.82 |
| hypothetical protein | HMPREF1534_02083 | Not Available | Negative | 2331528 - 2332004 | 18501.1 |
| hypothetical protein | HMPREF1534_02084 | Not Available | Negative | 2332001 - 2332222 | 8296.22 |
| txe/yoeb family addiction module toxin | HMPREF1534_02085 | Not Available | Negative | 2332374 - 2332649 | 10833.1 |
| hypothetical protein | HMPREF1534_02086 | Not Available | Negative | 2332642 - 2332896 | 9937.78 |
| hypothetical protein | HMPREF1534_02087 | Not Available | Negative | 2333082 - 2334269 | 45013.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


