Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l9 | HMPREF1534_02048 | Not Available | Negative | 2301964 - 2302407 | 16145.9 |
| 30s ribosomal protein s18 | HMPREF1534_02049 | Not Available | Negative | 2302423 - 2302692 | 10561.2 |
| 30s ribosomal protein s6 | HMPREF1534_02050 | Not Available | Negative | 2302695 - 2303039 | 13500.4 |
| hypothetical protein | HMPREF1534_02051 | Not Available | Positive | 2303252 - 2303698 | 17290.0 |
| hypothetical protein | HMPREF1534_02052 | Not Available | Positive | 2303804 - 2303986 | 6156.04 |
| hypothetical protein | HMPREF1534_02053 | Not Available | Positive | 2304239 - 2305168 | 36036.6 |
| hypothetical protein | HMPREF1534_02054 | Not Available | Positive | 2305516 - 2306082 | 21256.3 |
| hypothetical protein | HMPREF1534_02055 | Not Available | Positive | 2306115 - 2307197 | 40037.7 |
| hypothetical protein | HMPREF1534_02056 | Not Available | Positive | 2307201 - 2307773 | 21594.0 |
| hypothetical protein | HMPREF1534_02057 | Not Available | Positive | 2307780 - 2309189 | 54535.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


