Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02028 | Not Available | Negative | 2278051 - 2279973 | 73611.5 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02029 | Not Available | Negative | 2279996 - 2283511 | 130910.0 |
| hypothetical protein | HMPREF1534_02030 | Not Available | Negative | 2283574 - 2284587 | 38288.1 |
| rna polymerase sigma-70 factor | HMPREF1534_02031 | Not Available | Negative | 2284676 - 2285284 | 23960.8 |
| cytidine deaminase | HMPREF1534_02032 | Not Available | Positive | 2285395 - 2285934 | 19956.8 |
| hypothetical protein | HMPREF1534_02033 | Not Available | Negative | 2286124 - 2286636 | 19544.3 |
| hypothetical protein | HMPREF1534_02034 | Not Available | Negative | 2286681 - 2287631 | 34831.8 |
| hypothetical protein | HMPREF1534_02035 | Not Available | Positive | 2287786 - 2289000 | 45730.9 |
| hypothetical protein | HMPREF1534_02036 | Not Available | Positive | 2289023 - 2289910 | 32695.6 |
| chromosomal replication initiator protein dnaa | HMPREF1534_02037 | Not Available | Positive | 2290250 - 2291653 | 53497.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


