Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01998 | Not Available | Negative | 2244529 - 2244957 | 16184.6 |
| nad+ synthetase | HMPREF1534_01999 | Not Available | Positive | 2245128 - 2247053 | 71243.9 |
| histidine biosynthesis hisb | HMPREF1534_02000 | Not Available | Negative | 2247242 - 2248360 | 42213.6 |
| histidinol-phosphate aminotransferase | HMPREF1534_02001 | Not Available | Negative | 2248375 - 2249427 | 39659.6 |
| histidinol dehydrogenase | HMPREF1534_02002 | Not Available | Negative | 2249441 - 2250721 | 46311.8 |
| atp phosphoribosyltransferase | HMPREF1534_02003 | Not Available | Negative | 2250765 - 2251616 | 31286.4 |
| hypothetical protein | HMPREF1534_02004 | Not Available | Negative | 2251845 - 2252336 | 18724.7 |
| hypothetical protein | HMPREF1534_02005 | Not Available | Negative | 2252347 - 2252646 | 11048.4 |
| uridine kinase | HMPREF1534_02006 | Not Available | Positive | 2252751 - 2253362 | 23282.3 |
| hypothetical protein | HMPREF1534_02007 | Not Available | Positive | 2253359 - 2254735 | 51958.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


