Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrolase coce/nond family protein | HMPREF1534_00009 | Not Available | Negative | 16712 - 18622 | 74457.4 |
| fumarate hydratase class i, aerobic | HMPREF1534_00010 | Not Available | Positive | 18764 - 20407 | 60518.5 |
| hypothetical protein | HMPREF1534_00011 | Not Available | Negative | 20509 - 21909 | 51460.2 |
| hypothetical protein | HMPREF1534_00012 | Not Available | Negative | 21906 - 22151 | 8516.58 |
| hypothetical protein | HMPREF1534_00013 | Not Available | Negative | 22240 - 23559 | 50351.7 |
| hydrophobe/amphiphile efflux-1 (hae1) family rnd transporter | HMPREF1534_00014 | Not Available | Negative | 23556 - 26591 | 112114.0 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_00015 | Not Available | Negative | 26611 - 27726 | 41033.6 |
| hypothetical protein | HMPREF1534_00016 | Not Available | Negative | 27781 - 28800 | 38120.2 |
| ribosome small subunit-dependent gtpase a | HMPREF1534_00017 | Not Available | Negative | 28814 - 29746 | 35232.2 |
| ribosome-recycling factor | HMPREF1534_00018 | Not Available | Negative | 29756 - 30316 | 20710.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


