Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01948 | Not Available | Positive | 2194888 - 2196453 | 59874.7 |
| hypothetical protein | HMPREF1534_01949 | Not Available | Positive | 2196468 - 2197982 | 57405.1 |
| hypothetical protein | HMPREF1534_01950 | Not Available | Positive | 2197993 - 2199531 | 56467.6 |
| ribosomal rna large subunit methyltransferase h | HMPREF1534_01951 | Not Available | Positive | 2199694 - 2200194 | 19447.8 |
| hypothetical protein | HMPREF1534_01952 | Not Available | Positive | 2200230 - 2204126 | 149936.0 |
| hypothetical protein | HMPREF1534_01953 | Not Available | Negative | 2204148 - 2205161 | 38309.0 |
| xaa-his dipeptidase | HMPREF1534_01954 | Not Available | Negative | 2205178 - 2206632 | 52936.5 |
| hypothetical protein | HMPREF1534_01955 | Not Available | Positive | 2206858 - 2207082 | 8194.31 |
| hypothetical protein | HMPREF1534_01956 | Not Available | Positive | 2207111 - 2207728 | 23165.4 |
| hypothetical protein | HMPREF1534_01957 | Not Available | Negative | 2208068 - 2208910 | 32488.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


