Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| naphthoate synthase | HMPREF1534_01938 | Not Available | Positive | 2182520 - 2183341 | 30367.5 |
| hypothetical protein | HMPREF1534_01939 | Not Available | Positive | 2183365 - 2183748 | 14858.8 |
| o-succinylbenzoate synthase | HMPREF1534_01940 | Not Available | Positive | 2183727 - 2184782 | 39928.1 |
| hypothetical protein | HMPREF1534_01941 | Not Available | Positive | 2184779 - 2185879 | 41139.1 |
| hypothetical protein | HMPREF1534_01942 | Not Available | Negative | 2185906 - 2186082 | 6931.29 |
| nicotinate-nucleotide diphosphorylase (carboxylating) | HMPREF1534_01943 | Not Available | Negative | 2186754 - 2187605 | 31276.2 |
| rna polymerase sigma-70 factor | HMPREF1534_01944 | Not Available | Positive | 2187684 - 2188247 | 22023.6 |
| hypothetical protein | HMPREF1534_01945 | Not Available | Positive | 2188313 - 2189317 | 38167.1 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_01946 | Not Available | Positive | 2189434 - 2192877 | 129470.0 |
| hypothetical protein | HMPREF1534_01947 | Not Available | Positive | 2192891 - 2194753 | 71769.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


