Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01828 | Not Available | Positive | 2072409 - 2073113 | 26270.6 |
| hypothetical protein | HMPREF1534_01829 | Not Available | Positive | 2073117 - 2073689 | 21142.7 |
| hypothetical protein | HMPREF1534_01830 | Not Available | Positive | 2073700 - 2074728 | 38419.4 |
| marc family membrane protein | HMPREF1534_01831 | Not Available | Negative | 2074827 - 2075429 | 22258.2 |
| hypothetical protein | HMPREF1534_01832 | Not Available | Positive | 2075615 - 2076283 | 25746.2 |
| hypothetical protein | HMPREF1534_01833 | Not Available | Positive | 2076600 - 2078642 | 78424.0 |
| hypothetical protein | HMPREF1534_01834 | Not Available | Positive | 2078657 - 2079106 | 17058.0 |
| hypothetical protein | HMPREF1534_01835 | Not Available | Positive | 2079111 - 2079545 | 16197.4 |
| c-terminal processing peptidase | HMPREF1534_01836 | Not Available | Positive | 2079560 - 2081308 | 65013.8 |
| 5-formyltetrahydrofolate cyclo-ligase | HMPREF1534_01837 | Not Available | Positive | 2081313 - 2081771 | 17638.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


