Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01778 | Not Available | Negative | 2010922 - 2011512 | 21382.3 |
| hypothetical protein | HMPREF1534_01779 | Not Available | Negative | 2011596 - 2012444 | 33159.0 |
| thioredoxin | HMPREF1534_01780 | Not Available | Negative | 2012552 - 2013022 | 17402.2 |
| hypothetical protein | HMPREF1534_01781 | Not Available | Positive | 2013280 - 2016411 | 120669.0 |
| kama family protein | HMPREF1534_01782 | Not Available | Positive | 2016631 - 2018730 | 81699.2 |
| hypothetical protein | HMPREF1534_01783 | Not Available | Negative | 2018853 - 2021192 | 87655.5 |
| hypothetical protein | HMPREF1534_01784 | Not Available | Positive | 2021425 - 2021757 | 13013.9 |
| hypothetical protein | HMPREF1534_01785 | Not Available | Negative | 2021795 - 2023534 | 65137.2 |
| hypothetical protein | HMPREF1534_01786 | Not Available | Negative | 2023545 - 2025455 | 71672.7 |
| hypothetical protein | HMPREF1534_01787 | Not Available | Positive | 2025589 - 2026554 | 35171.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


