Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01738 | Not Available | Negative | 1966726 - 1967190 | 17777.6 |
| methylated-dna-[protein]-cysteine s-methyltransferase | HMPREF1534_01739 | Not Available | Positive | 1967287 - 1967598 | 11982.6 |
| hypothetical protein | HMPREF1534_01740 | Not Available | Negative | 1967602 - 1968078 | 18627.1 |
| hypothetical protein | HMPREF1534_01741 | Not Available | Negative | 1968113 - 1968232 | 4954.18 |
| hypothetical protein | HMPREF1534_01742 | Not Available | Negative | 1968239 - 1968454 | 8121.97 |
| rlua family pseudouridine synthase | HMPREF1534_01743 | Not Available | Positive | 1968614 - 1970278 | 63315.8 |
| mate efflux family protein | HMPREF1534_01744 | Not Available | Negative | 1970232 - 1971602 | 49509.1 |
| hypothetical protein | HMPREF1534_01745 | Not Available | Negative | 1971878 - 1972048 | 6242.6 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_01746 | Not Available | Positive | 1972296 - 1973486 | 44404.5 |
| hydrophobe/amphiphile efflux-1 (hae1) family rnd transporter | HMPREF1534_01747 | Not Available | Positive | 1973524 - 1976622 | 112746.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


