Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01717 | Not Available | Positive | 1942634 - 1942978 | 13555.6 |
| hypothetical protein | HMPREF1534_01718 | Not Available | Positive | 1943067 - 1944848 | 68575.3 |
| mate efflux family protein | HMPREF1534_01719 | Not Available | Positive | 1945172 - 1946416 | 46177.4 |
| hypothetical protein | HMPREF1534_01720 | Not Available | Positive | 1946430 - 1947062 | 24075.9 |
| hypothetical protein | HMPREF1534_01721 | Not Available | Negative | 1947557 - 1948435 | 33832.3 |
| hypothetical protein | HMPREF1534_01722 | Not Available | Negative | 1948453 - 1952115 | 142798.0 |
| hypothetical protein | HMPREF1534_01723 | Not Available | Negative | 1952099 - 1952650 | 21432.4 |
| hypothetical protein | HMPREF1534_01724 | Not Available | Negative | 1952690 - 1953886 | 47848.6 |
| hypothetical protein | HMPREF1534_01725 | Not Available | Negative | 1953890 - 1954249 | 13394.0 |
| hypothetical protein | HMPREF1534_01726 | Not Available | Negative | 1954373 - 1955374 | 38983.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


