Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded dna-binding protein | HMPREF1534_01657 | Not Available | Positive | 1885580 - 1885957 | 14103.5 |
| hypothetical protein | HMPREF1534_01658 | Not Available | Positive | 1886268 - 1886618 | 13675.6 |
| hypothetical protein | HMPREF1534_01659 | Not Available | Positive | 1886638 - 1887225 | 22979.0 |
| hypothetical protein | HMPREF1534_01660 | Not Available | Positive | 1887609 - 1888361 | 27665.8 |
| hypothetical protein | HMPREF1534_01661 | Not Available | Positive | 1888367 - 1888714 | 13131.9 |
| hypothetical protein | HMPREF1534_01662 | Not Available | Positive | 1888832 - 1889344 | 19294.9 |
| hypothetical protein | HMPREF1534_01663 | Not Available | Positive | 1889895 - 1890527 | 24402.1 |
| hypothetical protein | HMPREF1534_01664 | Not Available | Positive | 1890822 - 1891310 | 18284.3 |
| hypothetical protein | HMPREF1534_01665 | Not Available | Positive | 1891788 - 1892369 | 22044.5 |
| hypothetical protein | HMPREF1534_01666 | Not Available | Positive | 1892366 - 1892863 | 19095.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


