Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01597 | Not Available | Positive | 1821123 - 1822535 | 54297.2 |
| hypothetical protein | HMPREF1534_01598 | Not Available | Positive | 1822547 - 1823014 | 16700.1 |
| upf0365 protein | HMPREF1534_01599 | Not Available | Positive | 1823046 - 1824044 | 35993.8 |
| hypothetical protein | HMPREF1534_01600 | Not Available | Positive | 1824191 - 1825075 | 33001.0 |
| hypothetical protein | HMPREF1534_01601 | Not Available | Positive | 1825085 - 1825570 | 18080.6 |
| trna modification gtpase mnme | HMPREF1534_01602 | Not Available | Positive | 1825572 - 1826972 | 51730.4 |
| hypothetical protein | HMPREF1534_01603 | Not Available | Negative | 1826898 - 1827089 | 7736.74 |
| hypothetical protein | HMPREF1534_01604 | Not Available | Positive | 1827200 - 1828225 | 40135.9 |
| hypothetical protein | HMPREF1534_01605 | Not Available | Positive | 1828620 - 1828832 | 7957.77 |
| hypothetical protein | HMPREF1534_01606 | Not Available | Positive | 1828846 - 1830939 | 79139.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


