Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l21 | HMPREF1534_01577 | Not Available | Positive | 1801394 - 1801711 | 11760.4 |
| 50s ribosomal protein l27 | HMPREF1534_01578 | Not Available | Positive | 1801734 - 1801997 | 9251.23 |
| thiamine pyrophosphokinase | HMPREF1534_01579 | Not Available | Negative | 1802528 - 1803163 | 23840.6 |
| nicotinamide mononucleotide transporter pnuc | HMPREF1534_01580 | Not Available | Negative | 1803160 - 1803723 | 21902.3 |
| serine-trna ligase | HMPREF1534_01581 | Not Available | Positive | 1803842 - 1805116 | 47911.4 |
| glutamate synthase (nadph), homotetrameric | HMPREF1534_01582 | Not Available | Positive | 1805299 - 1807602 | 83251.2 |
| hypothetical protein | HMPREF1534_01583 | Not Available | Positive | 1807811 - 1808566 | 28932.8 |
| hypothetical protein | HMPREF1534_01584 | Not Available | Positive | 1808796 - 1810610 | 70178.7 |
| hypothetical protein | HMPREF1534_01585 | Not Available | Positive | 1810659 - 1811513 | 33137.7 |
| hypothetical protein | HMPREF1534_01586 | Not Available | Positive | 1811775 - 1812683 | 34488.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


