Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01537 | Not Available | Negative | 1752172 - 1752972 | 29956.1 |
| hypothetical protein | HMPREF1534_01538 | Not Available | Negative | 1752969 - 1753385 | 15728.4 |
| hypothetical protein | HMPREF1534_01539 | Not Available | Negative | 1753382 - 1753765 | 14550.5 |
| hypothetical protein | HMPREF1534_01540 | Not Available | Negative | 1753786 - 1754121 | 12347.4 |
| glyceraldehyde-3-phosphate dehydrogenase a | HMPREF1534_01541 | Not Available | Negative | 1754275 - 1755285 | 35961.1 |
| large-conductance mechanosensitive channel | HMPREF1534_01542 | Not Available | Positive | 1755437 - 1755880 | 15906.8 |
| gmp synthase | HMPREF1534_01543 | Not Available | Positive | 1756195 - 1757748 | 57707.2 |
| hypothetical protein | HMPREF1534_01544 | Not Available | Positive | 1757824 - 1758651 | 30899.0 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_01545 | Not Available | Positive | 1758795 - 1759823 | 38303.5 |
| hypothetical protein | HMPREF1534_01546 | Not Available | Positive | 1759844 - 1762870 | 111714.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


